Potential use of PGPR based biofertilizer for improving the nutrient availability in soil and agronomic efficiency of upland rice

Rahma Tia Harahap; Diyan Herdiyantoro; Mieke Rochimi Setiawati; Isna Niar Rahmatul Azizah; Tualar Simarmata

doi:10.24198/kultivasi.v21i3.40061

Potential use of PGPR based biofertilizer for improving the nutrient availability in soil and agronomic efficiency of upland rice

Rahma Tia Harahap, Diyan Herdiyantoro, Mieke Rochimi Setiawati, Isna Niar Rahmatul Azizah, Tualar Simarmata

Abstract

Abstract

Present study aimed to perform literature review to investigate the current status and potential use of plant growth promoting rhizobacteria (PGPR) for enhancing the soil plant’s health, plant growth and productivity in sustainable ways. The Systematic Literature Review (SLR) methods was applied according to Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) on published scientific literature from 2012-2022. Results revealed that genus diversity of PGPR (Bacillus sp., Serratia sp., Streptomyces sp., Pseudomonas sp., and Burkholderia sp.) produce siderophore and phytohormones such as indole-3-acetic acid (IAA), gibberellin (GAs), auxin, and 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activity, organic acids, biocontrol agent that contribute to the improvement of nutrient bioavailability (nitrogen fixing, phosphate solubilizing and Fe-uptake). The growth character of rice inoculated with biofertilizer and combined with 50% inorganic fertilizer produced no significant difference with pots that received 100% inorganic fertilizer. These results concluded that PGPR that produced phytohormone and siderophore could be developed as a potential bioagent or biofertilizer to improve the growth character and yield of upland rice (Oryza sativa L.) in dry environmental conditions.

Keywords: PGPR producing phytohormone and siderophore, N2-fixer, Biofertilizer, Systematic review

Abstrak

Kajian tinjauan pustaka ini dilakukan untuk menyelidiki status saat ini dan potensi penggunaan rizobakteri pemacu pertumbuhan tanaman (PGPR) untuk meningkatkan kesehatan tanah, pertumbuhan tanaman, dan produktivitas secara berkelanjutan. Metode Systematic Literature Review (SLR) diterapkan sesuai dengan Preferred Reporting Items for Systematic Review and Meta-Analyses (PRISMA) pada literatur ilmiah yang diterbitkan dari 2012-2022. Mesin pencari Google Scholar dan ScienceDirect dengan kata kunci yang tepat digunakan untuk memilih dan mengumpulkan jurnal ilmiah yang terindeks bereputasi dan digunakan sebagai referensi utama database. Hasil penelitian menunjukkan bahwa keragaman genus PGPR (Bacillus sp., Serratia sp., Streptomyces sp., Pseudomonas sp., dan Burkholderia sp.) menghasilkan siderophore dan memproduksi phytohormon seperti indole-3-acetic acid (IAA), giberelin (GAs), auksin, dan 1-aminocyclopropane-1-carboxylic acid (ACC) aktivitas deaminase, asam organik, agen biokontrol yang berkontribusi pada peningkatan bioavailabilitas nutrisi (pengikatan nitrogen, pelarutan fosfat, dan penyerapan Fe). Karakter tumbuh padi yang diinokulasi pupuk hayati dan dikombinasikan dengan pupuk kimia dosis 50% menghasilkan perbedaan yang tidak nyata dengan pot yang menerima pupuk anorganik 100%. Hasil ini menyimpulkan bahwa PGPR penghasil pitohormon dan siderophore dapat dikembangkan sebagai bioagent atau pupuk hayati yang potensial untuk meningkatkan karakter tumbuh dan hasil padi (Oryza sativa L.) gogo pada kondisi lingkungan yang kering.

Keywords: PGPR produksi fitohormon dan siderofor, penambat-N2-fixer, biofertilizer, Systematic review

Keywords

Systematic review; growth factor; N2-fixer; IAA; gibberellin; nutrient uptake

Full Text:

PDF

References

Agustiyani, D. 2016. Penapisan dan karakterisasi rhizobakteria serta uji aktivitasnya dalam mendukung perkecambahan dan pertumbuhan benih jagung (Zea mays L.). Jurnal Biologi Indonesia, 12(2) : 241–248.

Bal, H.B., L. Nayak, S. Das, and T.K. Adhya. 2013. Isolation of ACC deaminase producing PGPR from rice rhizosphere and evaluating their plant growth promoting activity under salt stress. Plant and Soil, 366(1–2): 93–105.

Bharti, N. and M. Suryavanshi. 2021. Quality control and regulation of biofertilizer: current scenario and future prospects. Advances in BioInoculant: 133-141.

Cavite, H.J.M., A.G. Mactal, E.V. Evangelista, and J.A. Cruz. 2021. Growth and yield response of upland rice to application of plant growth-promoting rhizobacteria. Journal of Plant Growth Regulation, 40(2): 494–508.

Ferreaira, M.J., H. Silva, and A. Cunha. 2019. Siderophore-producing rhizobacteria as a promising tool for empowering plants to cope with iron limitation in saline soils: A review. Pedosphere, 29(4): 409–420.

Figuiredo, M.V.B., L. Seldin, F.F. Araujo, and R.L.M. Mariano. 2011. Plant Growth Promoting Rhizobacteria: Fundamental and Aplication, Microbiology Monograph 18: 21-43. Berlin: Springer Verlag Berlin Heidelberg.

Glickmann, E. and Y. Dessaux. 1995. A critical examination of the specificity of the Salkowski reagent for indolic compouds produced by phytopathogenic bacteria. Applied Enviroment Microbial, 61: 793-796.

Gouda, S., R.G. Kerry, G. Das, S. Paramithiotis, H.S. Shin, and J.K. Patra. 2018. Revitalization of plant growth promoting rhizobacteria for sustainable development in agriculture. Microbiological Research, 206: 131–140.

Hahm, M.S., J.S. Son, B.S. Kim, S.Y. Ghim. 2017. Comparative study of rhizobacterial communities in pepper greenhouses and examination of the effects of salt accumulation under different cropping systems. Archives of Microbiology, 199(2): 303–315.

Kantachote, D., T. Nunkaew, T. Kantha and S. Chaiprapat. 2016. Biofertilizers from Rhodopseudomonas palustris strains to enhance rice yields and reduce methane emissions. Appl. Soil. Ecol., 100:154–161. https://doi.org/10.1016/j.apsoil.2015.12.05

Manimekalai and G. Kannahi. 2017. Adaptable benefits of selected rhizospheric isolates from rice and legumes. Asian Journal of Science and Technology, 8: 5443-5449.

Mishra, S. and C.S. Nautiyal. 2012. Reducing the allelopathic effect of Parthenium hysterophorus L. on wheat (Triticum aestivum L.) by Pseudomonas putida. Plant Growth Regulation, 66: 155–165.

Nabila and R.S. Kasiamdari. 2021. Antagonistic activity of siderophore-producing bacteria from black rice rhizosphere against rice blast fungus Pyricularia Oryzae. Microbiology and Biotechnology Letters, 49(2): 217–224.

Nascente, A.S., A.C. Lanna, T.P. de Sousa, A.A. Chaibub, A.C.A. de Souza, and M.C.C. de Filippi. 2019. N fertilizer dose-dependent efciency of Serratia spp. for improving growth and yield of upland rice (Oryza sativa L.). Int. J. Plant Prod., 13:217–226. https://doi.org/10.1007/42106-019-00049-5.

Nautiyal, C.S., S. Srivastava, P.S. Chauhan, K. Seem, and K.S. Sopory. 2013. Plant growth promoting bacteria Bacillus amyloliquefaciens NBRISNI13 modulates gene expression profile of leaf and rhizosphere community in rice during salt stress. Plant Physiol. Biochem., 66: 1-9.

Omar, M.H., Z. Berahim, N. Ariffin, M.R. Ismail, H.M. Saud, N. Amalina, and S.H. Habib. 2014. Improved water use efficiency in rice under limited water environment through microbial inoculation. Journal of Food, Agriculture and Environment, 12(3–4): 149–154.

Patel, P., Trivedi, G., Saraf, M. 2018. Iron biofortification in mungbean using siderophore producing plant growth promoting bacteria. Environmental Sustainability, 1(4), 357–365.

Penrose, D.M. and B.R. Glick. 2003. Methods for isolating and characterizhing ACC deaminase-containing plant growth promoting rhizobacteria. Physol Plant, 118: 10-15.

Prihatiningsih, N., H.A. Djatmiko, and P. Lestari. 2017. Aktivitas siderofor Bacillus Subtilis sebagai pemacu pertumbuhan dan pengendali patogen tanaman terung. Jurnal Hama Dan Penyakit Tumbuhan Tropika, 17(2): 170.

Priyanka, A.T., A.S. Kotasthane, A. Kosharia, R. Kushwah, and N. Zaidi. 2017. Crop specific plant growth promoting effects of ACCd enzyme and siderophore producing and cynogenic fluorescent pseudomonas. 3 Biotech, 7(1): 1–11.

Saeed, Q., W. Xiukang, F.U. Haider, J. Kučerik, M.Z. Mumtaz, J. Holatko, and Naseem. 2021. Rhizosphere bacteria in plant growth promotion, biocontrol, and bioremediation of contaminated sites: A comprehensive review of effects and mechanisms. International Journal of Molecular Sciences, 22(19).

Sastypratiwi, H. and R.D. Nyoto. 2020. Analisis Data Artikel Sistem Pakar Menggunakan Metode Systematic Review. Jurnal Edukasi Dan Penelitian Informatika (JEPIN), 6(2), 250.

Schwyn, B. and J.B. Neilands. 1987. University chemical assay for detection and determination of siderophore. Biochem, 160: 46-52.

Sudewi, S., U.A. Palu, B. Baharuddin, U. Hasanuddin, A.R. Saleh. 2020. Screening of plant growth promotion rhizobacteria (PGPR) to increase local aromatic rice plant growth. International Journal of Pharmaceutical Research, 13(01).

Tan, K.Z., O. Radziah, M.S. Halimi, A.R. Khairuddin, S.H. Habib, and Z.H. Shamsuddin. 2014. Isolation and characterization of rhizobia and plant growth-promoting rhizobacteria and their effects on growth of rice seedlings. American Journal of Agricultural and Biological Science, 9(3): 342–360.

Tiara, C.A., F.D. Rahmatina, R. Fajrianeldi, and L. Maira. 2019. Sido-Char sebagai pembenah keracunan Fe pada tanah sawah. Jurnal Tanah Dan Sumberdaya Lahan, 6(2), 1243–1250.

Vandana, U.K., B. Singha, A.B.M. Gulzar, and P.B. Mazumder. 2020. Molecular mechanisms in plant growth promoting bacteria (PGPR) to resist environmental stress in plants. In Molecular Aspects of Plant Beneficial Microbes in Agriculture. Academic Press, 221-223. https://doi.org/10.1016/B978-0-12-818469-1.00019-5.

DOI: https://doi.org/10.24198/kultivasi.v21i3.40061